This animation gives a 360-degree view of the phycobilisome structure researchers helped reveal. Credit: The Kerfeld Lab/Nature

This story is adapted from a news release from Michigan State University

-By Matt Davenport

Researchers at Michigan State University (MSU), UC Berkeley, the University of Southern Bohemia, and Lawrence Berkeley National Laboratory (Berkeley Lab) have helped reveal the most detailed picture to date of important biological “antennae.”

Nature has evolved these structures to harness the sun’s energy through photosynthesis, but these sunlight receivers don’t belong to plants. They’re found in microbes known as cyanobacteria, the evolutionary descendants of the first organisms on Earth capable of taking sunlight, water, and carbon dioxide and turning them into sugars and oxygen.

Published this week in the journal Nature, the findings immediately shed new light on microbial photosynthesis — specifically how light energy is captured and sent to where it’s needed to power the conversion of CO₂ into sugars. Going forward, the insights could also help researchers remediate harmful algal blooms, develop artificial photosynthesis systems for renewable energy, and enlist microbes in sustainable manufacturing that starts with the raw materials of CO₂ and sunlight.

“There’s a lot of interest in using cyanobacteria as solar-powered factories that capture sunlight and convert it into a kind of energy that can be used to make important products,” said Cheryl Kerfeld, a member of the MSU-DOE Plant Research Laboratory, which is supported by the U.S. Department of Energy. “With a blueprint like the one we’ve provided in this study, you can start thinking about tuning and optimizing the light-harvesting component of photosynthesis.”

“Once you see how something works, you have a better idea of how you can modify it and manipulate it. That’s a big advantage,” said Markus Sutter, a senior research associate in the Kerfeld Lab, which operates at MSU and Berkeley Lab.

The researchers uncovered an unparalleled level of detail in the phycobilisome, which cyanobacteria use in photosynthesis. Its constituent protein and pigment structures are shown as the blue and green assemblies in this illustration. The OCP, the occasional orange hangers-on, help dissipate excess captured energy as heat. Credit: Janet Iwasa/University of Utah

The cyanobacterial antenna structures, called phycobilisomes, are complex collections of pigments and proteins, which assemble into relatively massive complexes.

For decades, researchers have been working to visualize the different building blocks of phycobilisomes to understand how they’re put together. Phycobilisomes are fragile, necessitating this piecemeal approach. Historically, researchers have been unable to get the high-resolution images of intact antennae needed to understand how they capture and conduct light energy.

Now, thanks to an international team of experts and advances in cryogenic electron microscopy (cryo-EM), the structure of a cyanobacterial light harvesting antenna is available with nearly atomic resolution.

“We were fortunate to be a team made up of people with complementary expertise, people who worked well together,” said Kerfeld, who is also a professor of structural bioengineering at MSU. “The group had the right chemistry.”

‘A long journey, full of surprises’ 

“This work is a breakthrough in the field of photosynthesis,” said Paul Sauer, a postdoctoral researcher in UC Berkeley Professor Eva Nogales’ cryo-EM lab. Nogales is also a senior faculty scientist in Berkeley Lab’s Biosciences Area.

“The complete light-harvesting structure of a cyanobacteria’s antenna has been missing until now,” Sauer said. “Our discovery helps us understand how evolution came up with ways to turn CO₂ and light into oxygen and sugar in bacteria, long before any plants existed on our planet.”

Along with Kerfeld, Sauer is a corresponding author of the new article. The team documented several new findings, including finding a new phycobilisome protein and observing two new ways that the phycobilisome orients its light-capturing rods that hadn’t been resolved before.

“It’s 12 pages of discoveries,” said María Agustina Domínguez-Martín of the Nature report. As a postdoctoral researcher in the Kerfeld Lab, Domínguez-Martín initiated the study at MSU and brought it to completion at Berkeley Lab. She is currently at the University of Cordoba in Spain as part of the Marie Skłowdoska-Curie Postdoctoral Fellowship. “It’s been a long journey full of nice surprises.”

One surprise, for example, was how a relatively small protein can act as a surge protector for the massive antenna. Before this work, researchers knew the phycobilisome could corral molecules called orange carotenoid proteins, or OCPs, when the phycobilisome had absorbed too much sunlight. The OCP releases the excess energy as heat, protecting a cyanobacterium’s photosynthetic system from burning up.

Until now, there’s been debate about how many OCPs the phycobilisome could bind and where those binding sites were. The new research answers these fundamental questions and offers potentially practical insights.

This kind of surge protecting system — which is called photoprotection and has analogs in the plant world — naturally tends to be wasteful. Cyanobacteria are slow to turn their photoprotection off after it has done its job. Now, with the complete picture of how the surge protector works, researchers can design ways to engineer “smart,” less wasteful, photoprotection, Kerfeld said.

And, despite helping make the planet habitable for humans and countless other organisms that need oxygen to survive, cyanobacteria have a dark side. Cyanobacteria blooms in lakes, ponds, and reservoirs can produce toxins that are deadly to native ecosystems as well as humans and their pets. Having a blueprint of how the bacteria not only collect the sun’s energy, but also protect themselves from too much of it, could inspire new ideas to attack harmful blooms.

Beyond the new answers and potential applications this work offers, the researchers are also excited about the new questions this work raises and the research it could inspire.

“If you think of this like Legos, you can keep building up, right? The proteins and pigments are like blocks making the phycobilisome, but then that’s part of the photosystem which is in the cell membrane which is part of the entire cell,” Sutter said. “We’re climbing up the ladder of scale in a way. We’ve found something new on our rung, but we can’t say we’ve got the system settled.”

“We’ve answered some questions, but we’ve opened the doors on others and, to me, that’s what makes it a breakthrough,” Domínguez-Martín said. “I’m excited to see how the field develops from here.”

This work was supported by the U.S. Department of Energy Office of Science, the National Institutes of Health, the Czech Science Foundation, and the European Union’s Horizon 2020 research and innovation program.

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Founded in 1931 on the belief that the biggest scientific challenges are best addressed by teams, Lawrence Berkeley National Laboratory and its scientists have been recognized with 14 Nobel Prizes. Today, Berkeley Lab researchers develop sustainable energy and environmental solutions, create useful new materials, advance the frontiers of computing, and probe the mysteries of life, matter, and the universe. Scientists from around the world rely on the Lab’s facilities for their own discovery science. Berkeley Lab is a multiprogram national laboratory, managed by the University of California for the U.S. Department of Energy’s Office of Science.

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